#!/usr/bin/env sh

function usage {
echo "This script takes a file filled with command
line calls and turns it into a SGE array job where
each line becomes its own task.

  usage: job_submitter FILE JOBNAME"
}

JOB_HANDLER=/delta/users/nickb/code/qutils/job_handler
#LOG_DIR=/delta/users/$USER/sge_logs
LOG_DIR=/scratch/$USER/sge_logs

FILE=$1
JOBNAME=$2

LOGS=$LOG_DIR/$JOBNAME
#mkdir -p $LOGS
rocks run host "mkdir -p $LOGS"

LINES=`wc -l $FILE | cut -f1 -d' '`

qsub -h -l matlab=1 -l friendly=3 -p -500 \
     -N $JOBNAME -j y -o $LOGS \
     -t 1-$LINES -S /bin/sh $JOB_HANDLER $FILE